IL_8CCS_249

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUAC

Length

38 nucleotides

Bulged bases

8CCS|1|AA|U|2460, 8CCS|1|AA|G|2463, 8CCS|1|AA|A|2468, 8CCS|1|AA|G|2481

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CCS|1|AA|G|2452
8CCS|1|AA|U|2453
8CCS|1|AA|G|2454
8CCS|1|AA|U|2455
8CCS|1|AA|A|2456
8CCS|1|AA|G|2457
8CCS|1|AA|A|2458
8CCS|1|AA|A|2459
8CCS|1|AA|U|2460
8CCS|1|AA|A|2461
8CCS|1|AA|A|2462
8CCS|1|AA|G|2463
8CCS|1|AA|U|2464
8CCS|1|AA|G|2465
8CCS|1|AA|G|2466
8CCS|1|AA|G|2467
8CCS|1|AA|A|2468
8CCS|1|AA|G|2469
*
8CCS|1|AA|C|2476
8CCS|1|AA|G|2477
8CCS|1|AA|C|2478
8CCS|1|AA|C|2479
8CCS|1|AA|A|2480
8CCS|1|AA|G|2481
8CCS|1|AA|U|2482
8CCS|1|AA|G|2483
8CCS|1|AA|A|2484
8CCS|1|AA|A|2485
8CCS|1|AA|A|2486
8CCS|1|AA|U|2487
8CCS|1|AA|A|2488
8CCS|1|AA|C|2489
8CCS|1|AA|C|2490
8CCS|1|AA|A|2491
8CCS|1|AA|C|2492
8CCS|1|AA|U|2493
8CCS|1|AA|A|2494
8CCS|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S25-A

Chain Cc

Transfer RNA; tRNA

Chain i

40S ribosomal protein S5