IL_8CCS_257

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CACAAUAAGGAUUG*CUUGAUUUUGUG

Length

26 nucleotides

Bulged bases

8CCS|1|c|A|1221, 8CCS|1|c|A|1226, 8CCS|1|c|A|1227, 8CCS|1|c|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CCS|1|c|C|1220
8CCS|1|c|A|1221
8CCS|1|c|C|1222
8CCS|1|c|A|1223
8CCS|1|c|A|1224
8CCS|1|c|U|1225
8CCS|1|c|A|1226
8CCS|1|c|A|1227
8CCS|1|c|G|1228
8CCS|1|c|G|1229
8CCS|1|c|A|1230
8CCS|1|c|U|1231
8CCS|1|c|U|1232
8CCS|1|c|G|1233
*
8CCS|1|c|C|1252
8CCS|1|c|U|1253
8CCS|1|c|U|1254
8CCS|1|c|G|1255
8CCS|1|c|A|1256
8CCS|1|c|U|1257
8CCS|1|c|U|1258
8CCS|1|c|U|1259
8CCS|1|c|U|1260
8CCS|1|c|G|1261
8CCS|1|c|U|1262
8CCS|1|c|G|1263

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A