IL_8CDL_005
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8CDL|1|AA|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0604
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CDL|1|AA|C|31
8CDL|1|AA|U|32
8CDL|1|AA|G|33
8CDL|1|AA|A|34
8CDL|1|AA|A|35
8CDL|1|AA|C|36
8CDL|1|AA|U|37
8CDL|1|AA|U|38
*
8CDL|1|AA|A|45
8CDL|1|AA|U|46
8CDL|1|AA|C|47
8CDL|1|AA|A|48
8CDL|1|AA|A|49
8CDL|1|AA|U|50
8CDL|1|AA|A|51
8CDL|1|AA|A|52
8CDL|1|AA|G|53
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L37-A
- Chain a
- 60S ribosomal protein L42-A
Coloring options: