IL_8CDL_007

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8CDL|1|AA|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.0888

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8CDL|1|AA|A|123
8CDL|1|AA|U|124
*
8CDL|1|AA|A|144
8CDL|1|AA|G|145
8CDL|1|AA|U|146
8CDL|1|AA|U|147
8CDL|1|AA|G|148
8CDL|1|AA|U|149

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain KK

60S ribosomal protein L8-A

Chain QQ

60S ribosomal protein L15-A