IL_8CDL_016
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_016 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0778
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CDL|1|AA|G|404
8CDL|1|AA|U|405
8CDL|1|AA|G|406
8CDL|1|AA|A|407
8CDL|1|AA|A|408
8CDL|1|AA|A|409
8CDL|1|AA|U|410
*
8CDL|1|CC|A|13
8CDL|1|CC|C|14
8CDL|1|CC|G|15
8CDL|1|CC|G|16
8CDL|1|CC|A|17
8CDL|1|CC|U|18
8CDL|1|CC|C|19
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain GG
- 60S ribosomal protein L4-A
- Chain Q
- 60S ribosomal protein L32
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