IL_8CDL_018

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CAGAGG*CAUAAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|C|435
8CDL|1|AA|A|436
8CDL|1|AA|G|437
8CDL|1|AA|A|438
8CDL|1|AA|G|494
8CDL|1|AA|G|495
*
8CDL|1|AA|C|618
8CDL|1|AA|A|619
8CDL|1|AA|U|620
8CDL|1|AA|A|621
8CDL|1|AA|A|622
8CDL|1|AA|U|623
8CDL|1|AA|G|624

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain II

60S ribosomal protein L6-A

Chain Q

60S ribosomal protein L32

Chain R

60S ribosomal protein L33-A