IL_8CDL_027

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_027 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1119

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CDL|1|AA|C|758
8CDL|1|AA|U|759
8CDL|1|AA|G|760
8CDL|1|AA|A|761
8CDL|1|AA|U|762
8CDL|1|AA|G|763
*
8CDL|1|AA|C|768
8CDL|1|AA|G|769
8CDL|1|AA|G|770
8CDL|1|AA|A|771
8CDL|1|AA|U|772
8CDL|1|AA|G|773

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L28

Chain OO

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L42-A