IL_8CDL_038

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

8CDL|1|AA|U|979, 8CDL|1|AA|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|C|977
8CDL|1|AA|G|978
8CDL|1|AA|U|979
8CDL|1|AA|A|980
8CDL|1|AA|U|981
8CDL|1|AA|C|982
*
8CDL|1|AA|G|1101
8CDL|1|AA|A|1102
8CDL|1|AA|A|1103
8CDL|1|AA|G|1104

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain JJ

60S ribosomal protein L7-A

Chain N

60S ribosomal protein L29