IL_8CDL_039
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- AGU*AU
- Length
- 5 nucleotides
- Bulged bases
- 8CDL|1|AA|G|984
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_039 not in the Motif Atlas
- Homologous match to IL_8C3A_040
- Geometric discrepancy: 0.0765
- The information below is about IL_8C3A_040
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
8CDL|1|AA|A|983
8CDL|1|AA|G|984
8CDL|1|AA|U|985
*
8CDL|1|AA|A|1099
8CDL|1|AA|U|1100
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain F
- 60S ribosomal protein L21-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain N
- 60S ribosomal protein L29
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