IL_8CDL_059

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8CDL|1|AA|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_059 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.3011

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8CDL|1|AA|G|1262
8CDL|1|AA|A|1263
8CDL|1|AA|G|1264
8CDL|1|AA|U|1265
8CDL|1|AA|G|1266
*
8CDL|1|AA|C|1275
8CDL|1|AA|U|1276
8CDL|1|AA|C|1277

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain Ee

60S ribosomal protein L12-A