IL_8CDL_069

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8CDL|1|AA|U|1820, 8CDL|1|AA|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_069 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.2177

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8CDL|1|AA|G|1623
8CDL|1|AA|G|1624
*
8CDL|1|AA|U|1819
8CDL|1|AA|U|1820
8CDL|1|AA|U|1821
8CDL|1|AA|C|1822

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L34-A