IL_8CDL_098
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UAG*UGGG
- Length
- 7 nucleotides
- Bulged bases
- 8CDL|1|AA|G|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_098 not in the Motif Atlas
- Homologous match to IL_8C3A_100
- Geometric discrepancy: 0.0685
- The information below is about IL_8C3A_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
8CDL|1|AA|U|2423
8CDL|1|AA|A|2424
8CDL|1|AA|G|2425
*
8CDL|1|AA|U|2604
8CDL|1|AA|G|2605
8CDL|1|AA|G|2606
8CDL|1|AA|G|2607
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Cc
- Transfer RNA; tRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L42-A
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