IL_8CDL_104

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8CDL|1|AA|A|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_104 not in the Motif Atlas

Geometric match to IL_5TBW_013

Geometric discrepancy: 0.2883

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8CDL|1|AA|G|2714
8CDL|1|AA|A|2715
8CDL|1|AA|U|2716
*
8CDL|1|AA|A|2740
8CDL|1|AA|C|2741

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L29

Chain a

60S ribosomal protein L42-A