3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
GAU*AC
Length
5 nucleotides
Bulged bases
8CDL|1|AA|A|2715
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CDL_104 not in the Motif Atlas
Geometric match to IL_5TBW_013
Geometric discrepancy: 0.2883
The information below is about IL_5TBW_013
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

8CDL|1|AA|G|2714
8CDL|1|AA|A|2715
8CDL|1|AA|U|2716
*
8CDL|1|AA|A|2740
8CDL|1|AA|C|2741

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain N
60S ribosomal protein L29
Chain a
60S ribosomal protein L42-A

Coloring options:


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