IL_8CDL_104
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8CDL|1|AA|A|2715
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_104 not in the Motif Atlas
- Geometric match to IL_5TBW_013
- Geometric discrepancy: 0.2883
- The information below is about IL_5TBW_013
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8CDL|1|AA|G|2714
8CDL|1|AA|A|2715
8CDL|1|AA|U|2716
*
8CDL|1|AA|A|2740
8CDL|1|AA|C|2741
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L29
- Chain a
- 60S ribosomal protein L42-A
Coloring options: