IL_8CDL_112

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_112 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.096

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8CDL|1|AA|U|2835
8CDL|1|AA|C|2836
8CDL|1|AA|A|2837
8CDL|1|AA|A|2838
8CDL|1|AA|G|2839
*
8CDL|1|AA|C|2849
8CDL|1|AA|G|2850
8CDL|1|AA|A|2851
8CDL|1|AA|C|2852
8CDL|1|AA|A|2853

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain MM

60S ribosomal protein L10

Chain Y

Ubiquitin-60S ribosomal protein L40