IL_8CDL_116

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8CDL|1|AA|A|2941, 8CDL|1|AA|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_116 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0459

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8CDL|1|AA|C|2881
8CDL|1|AA|U|2882
*
8CDL|1|AA|A|2940
8CDL|1|AA|A|2941
8CDL|1|AA|C|2942
8CDL|1|AA|G|2943

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A

Chain Pp

dipeptide