IL_8CDL_118
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UA*UAAG
- Length
- 6 nucleotides
- Bulged bases
- 8CDL|1|AA|A|2911
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_118 not in the Motif Atlas
- Geometric match to IL_5TBW_111
- Geometric discrepancy: 0.1496
- The information below is about IL_5TBW_111
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_95601.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
8CDL|1|AA|U|2891
8CDL|1|AA|A|2892
*
8CDL|1|AA|U|2909
8CDL|1|AA|A|2910
8CDL|1|AA|A|2911
8CDL|1|AA|G|2912
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain FF
- 60S ribosomal protein L3
- Chain LL
- 60S ribosomal protein L9-A
- Chain Y
- Ubiquitin-60S ribosomal protein L40
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