IL_8CDL_133

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8CDL|1|AA|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_133 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.1735

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8CDL|1|AA|C|3193
8CDL|1|AA|C|3194
*
8CDL|1|AA|G|3197
8CDL|1|AA|U|3198
8CDL|1|AA|G|3199

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain LL

60S ribosomal protein L9-A

Chain PP

60S ribosomal protein L14-A