IL_8CDL_155

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_155 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1125

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8CDL|1|c|U|27
8CDL|1|c|A2M|28
8CDL|1|c|U|29
*
8CDL|1|c|G|597
8CDL|1|c|U|598
8CDL|1|c|A|599

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A