IL_8CDL_155
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- U(A2M)U*GUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_155 not in the Motif Atlas
- Geometric match to IL_5TBW_110
- Geometric discrepancy: 0.1125
- The information below is about IL_5TBW_110
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8CDL|1|c|U|27
8CDL|1|c|A2M|28
8CDL|1|c|U|29
*
8CDL|1|c|G|597
8CDL|1|c|U|598
8CDL|1|c|A|599
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain m
- 40S ribosomal protein S9-A
- Chain z
- 40S ribosomal protein S23-A
Coloring options: