IL_8CDL_174

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_174 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.1256

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8CDL|1|c|G|389
8CDL|1|c|G|390
8CDL|1|c|A|391
*
8CDL|1|c|U|406
8CDL|1|c|A|407
8CDL|1|c|C|408

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L23-A

Chain j

40S ribosomal protein S6-A

Chain l

40S ribosomal protein S8-B