IL_8CDL_179

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAG*CGAGG(A2M)AC

Length

11 nucleotides

Bulged bases

8CDL|1|c|G|539

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_179 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.2147

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8CDL|1|c|G|514
8CDL|1|c|A|515
8CDL|1|c|G|516
*
8CDL|1|c|C|536
8CDL|1|c|G|537
8CDL|1|c|A|538
8CDL|1|c|G|539
8CDL|1|c|G|540
8CDL|1|c|A2M|541
8CDL|1|c|A|542
8CDL|1|c|C|543

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A