IL_8CDL_183

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

G(OMG)UGCCAG*CGG(OMU)AAUUCC

Length

18 nucleotides

Bulged bases

8CDL|1|c|A|579, 8CDL|1|c|U|581, 8CDL|1|c|U|582

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|c|G|561
8CDL|1|c|OMG|562
8CDL|1|c|U|563
8CDL|1|c|G|564
8CDL|1|c|C|565
8CDL|1|c|C|566
8CDL|1|c|A|567
8CDL|1|c|G|568
*
8CDL|1|c|C|575
8CDL|1|c|G|576
8CDL|1|c|G|577
8CDL|1|c|OMU|578
8CDL|1|c|A|579
8CDL|1|c|A|580
8CDL|1|c|U|581
8CDL|1|c|U|582
8CDL|1|c|C|583
8CDL|1|c|C|584

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain Bb

Transfer RNA; tRNA

Chain Dd

Messenger RNA

Chain g

RPS3 isoform 1

Chain z

40S ribosomal protein S23-A