IL_8CDL_197
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8CDL|1|c|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_197 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2236
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8CDL|1|c|U|893
8CDL|1|c|U|894
8CDL|1|c|G|895
8CDL|1|c|U|896
8CDL|1|c|C|897
8CDL|1|c|A|898
8CDL|1|c|G|899
*
8CDL|1|c|C|910
8CDL|1|c|U|911
8CDL|1|c|U|912
8CDL|1|c|G|913
8CDL|1|c|G|914
8CDL|1|c|A|915
8CDL|1|c|U|916
8CDL|1|c|U|917
8CDL|1|c|U|918
8CDL|1|c|A|919
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain e
- 40S ribosomal protein S1-A
- Chain q
- 40S ribosomal protein S14-A
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