IL_8CDL_198
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_198 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.0849
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CDL|1|c|G|985
8CDL|1|c|G|986
8CDL|1|c|G|987
8CDL|1|c|A|988
8CDL|1|c|U|989
8CDL|1|c|C|990
*
8CDL|1|c|G|1014
8CDL|1|c|U|1015
8CDL|1|c|C|1016
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain b
- 60S ribosomal protein L43-A
- Chain q
- 40S ribosomal protein S14-A
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