IL_8CDL_211

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_211 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1446

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8CDL|1|c|G|1270
8CDL|1|c|OMG|1271
8CDL|1|c|U|1272
*
8CDL|1|c|G|1438
8CDL|1|c|C|1439
8CDL|1|c|C|1440

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain g

RPS3 isoform 1