3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
G(OMG)U*GCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CDL_211 not in the Motif Atlas
Geometric match to IL_4V9F_105
Geometric discrepancy: 0.1446
The information below is about IL_4V9F_105
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8CDL|1|c|G|1270
8CDL|1|c|OMG|1271
8CDL|1|c|U|1272
*
8CDL|1|c|G|1438
8CDL|1|c|C|1439
8CDL|1|c|C|1440

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain Bb
Transfer RNA; tRNA
Chain g
RPS3 isoform 1

Coloring options:


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