IL_8CDL_211
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- G(OMG)U*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_211 not in the Motif Atlas
- Geometric match to IL_4V9F_105
- Geometric discrepancy: 0.1446
- The information below is about IL_4V9F_105
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8CDL|1|c|G|1270
8CDL|1|c|OMG|1271
8CDL|1|c|U|1272
*
8CDL|1|c|G|1438
8CDL|1|c|C|1439
8CDL|1|c|C|1440
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain Bb
- Transfer RNA; tRNA
- Chain g
- RPS3 isoform 1
Coloring options: