3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
8CDL|1|c|C|1274
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CDL_212 not in the Motif Atlas
Geometric match to IL_4V88_450
Geometric discrepancy: 0.1358
The information below is about IL_4V88_450
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_76319.2
Basepair signature
cWW-L-cWS-cWW
Number of instances in this motif group
4

Unit IDs

8CDL|1|c|U|1272
8CDL|1|c|G|1273
8CDL|1|c|C|1274
8CDL|1|c|A|1275
8CDL|1|c|U|1276
*
8CDL|1|c|A|1436
8CDL|1|c|U|1437
8CDL|1|c|G|1438

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain 5
HLJ1_G0030400.mRNA.1.CDS.1
Chain Bb
Transfer RNA; tRNA
Chain Dd
Messenger RNA
Chain g
RPS3 isoform 1
Chain n
40S ribosomal protein S10-A
Chain w
40S ribosomal protein S20

Coloring options:


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