IL_8CDL_238

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGGG*CUUUGUA

Length

11 nucleotides

Bulged bases

8CDL|1|AA|U|249, 8CDL|1|AA|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|U|169
8CDL|1|AA|G|170
8CDL|1|AA|G|171
8CDL|1|AA|G|172
*
8CDL|1|AA|C|247
8CDL|1|AA|U|248
8CDL|1|AA|U|249
8CDL|1|AA|U|250
8CDL|1|AA|G|251
8CDL|1|AA|U|252
8CDL|1|AA|A|253

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain OO

60S ribosomal protein L13-A

Chain T

60S ribosomal protein L35-A