IL_8CDL_239

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CC(OMG)*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_239 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.0588

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8CDL|1|AA|C|803
8CDL|1|AA|C|804
8CDL|1|AA|OMG|805
*
8CDL|1|AA|C|938
8CDL|1|AA|U|939
8CDL|1|AA|G|940

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain GG

60S ribosomal protein L4-A

Chain M

60S ribosomal protein L28