IL_8CDL_241

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCUAGACAGC*GCCGAA

Length

16 nucleotides

Bulged bases

8CDL|1|AA|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|U|1218
8CDL|1|AA|C|1219
8CDL|1|AA|U|1220
8CDL|1|AA|A|1221
8CDL|1|AA|G|1222
8CDL|1|AA|A|1223
8CDL|1|AA|C|1224
8CDL|1|AA|A|1225
8CDL|1|AA|G|1226
8CDL|1|AA|C|1227
*
8CDL|1|AA|G|1282
8CDL|1|AA|C|1283
8CDL|1|AA|C|1284
8CDL|1|AA|G|1285
8CDL|1|AA|A|1286
8CDL|1|AA|A|1287

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain E

60S ribosomal protein L20-A

Chain Y

Ubiquitin-60S ribosomal protein L40