IL_8CDL_243

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GGAA*U(OMC)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_243 not in the Motif Atlas

Geometric match to IL_8C3A_082

Geometric discrepancy: 0.0942

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8CDL|1|AA|G|1898
8CDL|1|AA|G|1899
8CDL|1|AA|A|1900
8CDL|1|AA|A|1901
*
8CDL|1|AA|U|2336
8CDL|1|AA|OMC|2337

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A