IL_8CDL_246

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CAUAGAG*UUUAUAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|C|2444
8CDL|1|AA|A|2445
8CDL|1|AA|U|2446
8CDL|1|AA|A|2447
8CDL|1|AA|G|2448
8CDL|1|AA|A|2449
8CDL|1|AA|G|2450
*
8CDL|1|AA|U|2497
8CDL|1|AA|U|2498
8CDL|1|AA|U|2499
8CDL|1|AA|A|2500
8CDL|1|AA|U|2501
8CDL|1|AA|A|2502
8CDL|1|AA|G|2503

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S1-A