IL_8CDL_254

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CACAAUAAGGAUUG*CUUGAUUUUGUG

Length

26 nucleotides

Bulged bases

8CDL|1|c|A|1223, 8CDL|1|c|A|1227, 8CDL|1|c|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|c|C|1220
8CDL|1|c|A|1221
8CDL|1|c|C|1222
8CDL|1|c|A|1223
8CDL|1|c|A|1224
8CDL|1|c|U|1225
8CDL|1|c|A|1226
8CDL|1|c|A|1227
8CDL|1|c|G|1228
8CDL|1|c|G|1229
8CDL|1|c|A|1230
8CDL|1|c|U|1231
8CDL|1|c|U|1232
8CDL|1|c|G|1233
*
8CDL|1|c|C|1252
8CDL|1|c|U|1253
8CDL|1|c|U|1254
8CDL|1|c|G|1255
8CDL|1|c|A|1256
8CDL|1|c|U|1257
8CDL|1|c|U|1258
8CDL|1|c|U|1259
8CDL|1|c|U|1260
8CDL|1|c|G|1261
8CDL|1|c|U|1262
8CDL|1|c|G|1263

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A