IL_8CDR_015
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 8CDR|1|AA|A|398, 8CDR|1|AA|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_015 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.0926
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8CDR|1|AA|G|376
8CDR|1|AA|A|377
8CDR|1|AA|A|378
8CDR|1|AA|C|379
*
8CDR|1|AA|G|390
8CDR|1|AA|A|391
8CDR|1|AA|G|392
8CDR|1|AA|U|393
8CDR|1|AA|G|394
8CDR|1|AA|A|395
8CDR|1|AA|A|396
8CDR|1|AA|A|397
8CDR|1|AA|A|398
8CDR|1|AA|A|399
8CDR|1|AA|G|400
8CDR|1|AA|U|401
8CDR|1|AA|A|402
8CDR|1|AA|C|403
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain K
- 60S ribosomal protein L26-A
- Chain X
- 60S ribosomal protein L39
Coloring options: