IL_8CDR_028
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CC(OMG)A(A2M)AG*CUAGUAGCUG
- Length
- 17 nucleotides
- Bulged bases
- 8CDR|1|AA|A|933, 8CDR|1|AA|G|937
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CDR|1|AA|C|803
8CDR|1|AA|C|804
8CDR|1|AA|OMG|805
8CDR|1|AA|A|806
8CDR|1|AA|A2M|807
8CDR|1|AA|A|808
8CDR|1|AA|G|809
*
8CDR|1|AA|C|931
8CDR|1|AA|U|932
8CDR|1|AA|A|933
8CDR|1|AA|G|934
8CDR|1|AA|U|935
8CDR|1|AA|A|936
8CDR|1|AA|G|937
8CDR|1|AA|C|938
8CDR|1|AA|U|939
8CDR|1|AA|G|940
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain GG
- 60S ribosomal protein L4-A
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L37-A
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