IL_8CDR_038

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

8CDR|1|AA|U|979, 8CDR|1|AA|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDR|1|AA|C|977
8CDR|1|AA|G|978
8CDR|1|AA|U|979
8CDR|1|AA|A|980
8CDR|1|AA|U|981
8CDR|1|AA|C|982
*
8CDR|1|AA|G|1101
8CDR|1|AA|A|1102
8CDR|1|AA|A|1103
8CDR|1|AA|G|1104

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain JJ

60S ribosomal protein L7-A

Chain N

60S ribosomal protein L29