IL_8CDR_045

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDR_045 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3639

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8CDR|1|AA|U|1014
8CDR|1|AA|U|1015
8CDR|1|AA|C|1016
8CDR|1|AA|C|1017
8CDR|1|AA|G|1018
*
8CDR|1|AA|U|1034
8CDR|1|AA|G|1035
8CDR|1|AA|A|1036

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain MM

60S ribosomal protein L10