IL_8CDR_101

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUGUAGAA*UACCACUAC

Length

17 nucleotides

Bulged bases

8CDR|1|AA|A|2488

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDR|1|AA|G|2452
8CDR|1|AA|U|2453
8CDR|1|AA|G|2454
8CDR|1|AA|U|2455
8CDR|1|AA|A|2456
8CDR|1|AA|G|2457
8CDR|1|AA|A|2458
8CDR|1|AA|A|2459
*
8CDR|1|AA|U|2487
8CDR|1|AA|A|2488
8CDR|1|AA|C|2489
8CDR|1|AA|C|2490
8CDR|1|AA|A|2491
8CDR|1|AA|C|2492
8CDR|1|AA|U|2493
8CDR|1|AA|A|2494
8CDR|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA