IL_8CDR_103
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 8CDR|1|AA|G|2522, 8CDR|1|AA|G|2585, 8CDR|1|AA|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_103 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.0572
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8CDR|1|AA|A|2520
8CDR|1|AA|U|2521
8CDR|1|AA|G|2522
8CDR|1|AA|A|2523
8CDR|1|AA|A|2524
8CDR|1|AA|G|2525
8CDR|1|AA|C|2526
*
8CDR|1|AA|G|2584
8CDR|1|AA|G|2585
8CDR|1|AA|G|2586
8CDR|1|AA|U|2587
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain J
- 60S ribosomal protein L25
- Chain KK
- 60S ribosomal protein L8-A
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