IL_8CDR_182
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GAG*CGAGG(A2M)AC
- Length
- 11 nucleotides
- Bulged bases
- 8CDR|1|c|G|539
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_182 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1579
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8CDR|1|c|G|514
8CDR|1|c|A|515
8CDR|1|c|G|516
*
8CDR|1|c|C|536
8CDR|1|c|G|537
8CDR|1|c|A|538
8CDR|1|c|G|539
8CDR|1|c|G|540
8CDR|1|c|A2M|541
8CDR|1|c|A|542
8CDR|1|c|C|543
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S30-A
- Chain m
- 40S ribosomal protein S9-A
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