IL_8CDR_216

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

8CDR|1|c|A|1227, 8CDR|1|c|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDR|1|c|A|1223
8CDR|1|c|A|1224
8CDR|1|c|U|1225
8CDR|1|c|A|1226
8CDR|1|c|A|1227
8CDR|1|c|G|1228
8CDR|1|c|G|1229
8CDR|1|c|A|1230
8CDR|1|c|U|1231
8CDR|1|c|U|1232
8CDR|1|c|G|1233
*
8CDR|1|c|C|1252
8CDR|1|c|U|1253
8CDR|1|c|U|1254
8CDR|1|c|G|1255
8CDR|1|c|A|1256
8CDR|1|c|U|1257
8CDR|1|c|U|1258
8CDR|1|c|U|1259
8CDR|1|c|U|1260

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A