IL_8CDR_266
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- AAUAG*CUUCU
- Length
- 10 nucleotides
- Bulged bases
- 8CDR|1|c|A|1346, 8CDR|1|c|U|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_266 not in the Motif Atlas
- Homologous match to IL_8CRE_459
- Geometric discrepancy: 0.3452
- The information below is about IL_8CRE_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CDR|1|c|A|1345
8CDR|1|c|A|1346
8CDR|1|c|U|1347
8CDR|1|c|A|1348
8CDR|1|c|G|1349
*
8CDR|1|c|C|1376
8CDR|1|c|U|1377
8CDR|1|c|U|1378
8CDR|1|c|C|1379
8CDR|1|c|U|1380
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 7
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain g
- RPS3 isoform 1
- Chain s
- 40S ribosomal protein S16-A
- Chain v
- 40S ribosomal protein S19-A
- Chain w
- 40S ribosomal protein S20
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