IL_8CDR_268

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GC*GUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDR_268 not in the Motif Atlas

Geometric match to IL_8P9A_298

Geometric discrepancy: 0.3106

The information below is about IL_8P9A_298

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8CDR|1|AA|G|173
8CDR|1|AA|C|174
*
8CDR|1|AA|G|244
8CDR|1|AA|U|245
8CDR|1|AA|U|246

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain OO

60S ribosomal protein L13-A

Chain T

60S ribosomal protein L35-A