IL_8CDU_007

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

8CDU|1|A|A|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_007 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.2364

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8CDU|1|A|U|127
8CDU|1|A|A|128
8CDU|1|A|A|129
8CDU|1|A|C|130
*
8CDU|1|A|G|239
8CDU|1|A|A|240

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17

Chain S

30S ribosomal protein S20