IL_8CDU_016

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUGAAG*CGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_016 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2329

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8CDU|1|A|U|417
8CDU|1|A|G|418
8CDU|1|A|A|419
8CDU|1|A|U|420
8CDU|1|A|G|421
8CDU|1|A|A|422
8CDU|1|A|A|423
8CDU|1|A|G|424
*
8CDU|1|A|C|435
8CDU|1|A|G|436
8CDU|1|A|U|437
8CDU|1|A|A|438
8CDU|1|A|A|439
8CDU|1|A|A|440
8CDU|1|A|G|441

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S4