IL_8CDU_018

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAACAAG*CCUUGAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDU|1|A|G|458
8CDU|1|A|A|459
8CDU|1|A|A|460
8CDU|1|A|C|461
8CDU|1|A|A|462
8CDU|1|A|A|463
8CDU|1|A|G|464
*
8CDU|1|A|C|486
8CDU|1|A|C|487
8CDU|1|A|U|488
8CDU|1|A|U|489
8CDU|1|A|G|490
8CDU|1|A|A|491
8CDU|1|A|C|492

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16