IL_8CDU_025

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GU*GUC

Length

5 nucleotides

Bulged bases

8CDU|1|A|U|642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_025 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.3825

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8CDU|1|A|G|613
8CDU|1|A|U|614
*
8CDU|1|A|G|641
8CDU|1|A|U|642
8CDU|1|A|C|643

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S8

Chain Q

30S ribosomal protein S17