IL_8CDU_031

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUAGC*GCGUAGAGAU

Length

17 nucleotides

Bulged bases

8CDU|1|A|A|711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDU|1|A|G|692
8CDU|1|A|U|693
8CDU|1|A|G|694
8CDU|1|A|U|695
8CDU|1|A|A|696
8CDU|1|A|G|697
8CDU|1|A|C|698
*
8CDU|1|A|G|707
8CDU|1|A|C|708
8CDU|1|A|G|709
8CDU|1|A|U|710
8CDU|1|A|A|711
8CDU|1|A|G|712
8CDU|1|A|A|713
8CDU|1|A|G|714
8CDU|1|A|A|715
8CDU|1|A|U|716

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Ribonuclease R

Chain V

30S ribosomal protein S11