IL_8CDU_041
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUG*CAUG
- Length
- 10 nucleotides
- Bulged bases
- 8CDU|1|A|C|1064
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDU_041 not in the Motif Atlas
- Geometric match to IL_6CZR_365
- Geometric discrepancy: 0.2244
- The information below is about IL_6CZR_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45699.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CDU|1|A|U|1062
8CDU|1|A|G|1063
8CDU|1|A|C|1064
8CDU|1|A|A|1065
8CDU|1|A|U|1066
8CDU|1|A|G|1067
*
8CDU|1|A|C|1212
8CDU|1|A|A|1213
8CDU|1|A|U|1214
8CDU|1|A|G|1215
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S3
- Chain N
- 30S ribosomal protein S14
Coloring options: