IL_8CDU_044

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_044 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3425

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8CDU|1|A|U|1132
8CDU|1|A|A|1133
8CDU|1|A|G|1134
*
8CDU|1|A|C|1158
8CDU|1|A|U|1159
8CDU|1|A|A|1160

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S9

Chain K

30S ribosomal protein S10