IL_8CDU_048

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_048 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3018

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8CDU|1|A|C|1268
8CDU|1|A|G|1269
8CDU|1|A|A|1270
8CDU|1|A|A|1271
*
8CDU|1|A|U|1282
8CDU|1|A|A|1283
8CDU|1|A|A|1284
8CDU|1|A|G|1285

Current chains

Chain A

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S19