IL_8CDU_050

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_050 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.1542

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8CDU|1|A|C|1312
8CDU|1|A|G|1313
8CDU|1|A|G|1314
8CDU|1|A|A|1315
8CDU|1|A|U|1316
8CDU|1|A|C|1317
*
8CDU|1|A|G|1338
8CDU|1|A|U|1339
8CDU|1|A|G|1340
8CDU|1|A|A|1341
8CDU|1|A|A|1342
8CDU|1|A|G|1343

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13